| Libray |
Origin |
Type |
Sequence |
Note |
the number of ESTs * |
| LA |
Leaf |
conventional cDNA |
5'-end |
0.5-1kb insert size |
6,535 |
| LB |
Leaf |
conventional cDNA |
5'-end |
1-3 kb insert size |
3,316 |
| LC |
Leaf |
conventional cDNA |
5'-end |
3-10 lb insert size |
6,270 |
| FA |
Fruit |
conventional cDNA |
5'-end |
0.5-1kb insert size |
13,653 |
| FB |
Fruit |
conventional cDNA |
5'-end |
1-12 kb insert size |
6,237 |
| FC |
Fruit |
full-length cDNA |
5'-end |
maturing fruits |
7,981 |
| LEFL1 |
Leaf |
full-length cDNA |
5'-end |
pathogen-treated |
30,872 |
| Viruses |
CMV ToMV |
| Fungi |
Pythium oligandrum (PO) |
| Non-pathogenic Alternaria alternata |
| Corynespora cassiicola |
| Cladosporium fulvum |
| Fusarium oxysporum f. sp. lycoperrsici |
| Non-pathogenic Fusarium oxysporum |
| Bacteria |
P. syringae pv. tomato DC3000 |
| P. syringae pv. tabaci 6605 |
| Other treatment ; JA treatment, SA treatment |
| LEFL2 |
Fruit |
full-length cDNA |
5'-end |
MG, Breaker, Turning, Red |
19,948 |
| LEFL3 |
Root |
full-length cDNA |
5'-end |
Roots of tomato with/without flower, Fusarium-treated root |
31,071 |
* Repeat resions and low-quality sequences were NOT removed (125,883 Micro-Tom ESTs).
|
|
| KTU3 |
the number of Unigenes |
|---|
| Singlets | 46,004 |
| Contigs (EST member >= 1) | 30,272 |
KTU3 is constructed by phrap program.
115,062 Micro-Tom ESTs and 164,922 publicly available ESTs were
assembled.
Repeat regions and low-quality sequences
were removed in these ESTs.
|
