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Full-length cDNA;  
KaFTom      

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This site provides information about Micro-Tom ESTs and Kazusa Tomato Unigenes constructed from Micro-Tom ESTs and publicly available tomato ESTs.

Micro-Tom ESTs KTU3 (Kazusa Tomato Unigene ver. 3)
Libray Origin Type Sequence Note the number of ESTs *
LA Leaf conventional cDNA 5'-end 0.5-1kb insert size 6,535
LB Leaf conventional cDNA 5'-end 1-3 kb insert size 3,316
LC Leaf conventional cDNA 5'-end 3-10 lb insert size 6,270
FA Fruit conventional cDNA 5'-end 0.5-1kb insert size 13,653
FB Fruit conventional cDNA 5'-end 1-12 kb insert size 6,237
FC Fruit full-length cDNA 5'-end maturing fruits 7,981
LEFL1 Leaf full-length cDNA 5'-end pathogen-treated 30,872
Viruses CMV ToMV
Fungi Pythium oligandrum (PO)
Non-pathogenic Alternaria alternata
Corynespora cassiicola
Cladosporium fulvum
Fusarium oxysporum f. sp. lycoperrsici
Non-pathogenic Fusarium oxysporum
Bacteria P. syringae pv. tomato DC3000
P. syringae pv. tabaci 6605
Other treatment ; JA treatment, SA treatment
LEFL2 Fruit full-length cDNA 5'-end MG, Breaker, Turning, Red 19,948
LEFL3 Root full-length cDNA 5'-end Roots of tomato with/without flower, Fusarium-treated root 31,071
* Repeat resions and low-quality sequences were NOT removed (125,883 Micro-Tom ESTs).
 
KTU3 the number of Unigenes
Singlets46,004
Contigs (EST member >= 1)30,272
KTU3 is constructed by phrap program.
115,062 Micro-Tom ESTs and 164,922 publicly available ESTs were assembled.
Repeat regions and low-quality sequences were removed in these ESTs.



Note. This database is supported by the Research Project for Utilizing Advanced Tehnologies in Agriculture, Forestry and Fisheries, National Bio-Resource Project, and grants from Meiji university and Kazusa DNA Research Institute. Site disclaimer, The information on this website are provided without any warranty.