KaFTom Kazusa Full-length Tomato cDNA Database

What's new About us

MiBASE

 

Tomato and other Solanaceae plant databases

MiBASE
Database for Micro-Tom ESTs and tomato unigenes constructed in our project

The SOL Genomics Network
Database for genomic, genetic and taxonomic information for species in Solanaceae

TomDB (in MIPS)
Database for the tomato genome database

DFCI Tomato Gene Index
Database for publicly available ESTs and unigenes for tomato

NBRP
The National BioResource Project (NBRP) is a national project that aims to collect, preser ve, and provide bioresources for life sciences research



Sequence databases

GenBank
Nucleotide sequence database maintained by the National Center for Biotechnology Informat ion (NCBI) in the USA

DDBJ
Nucleotide sequence da tabase at the National institude of Genetics (NIG) in Japan

EMBL
Nucleotide sequence da tabase at European Bioinformatics institude (EBI) in the UK

dbEST
EST database for each organism in NCBI

UniGene
Unigene database for each organism in NCBI

dbGSS
Genome survey sequences (GSS) database for each organism in NCBI



Gene expression databases

GEO
Providing data from microarray, serial analysis of gene expression (SAGE), and mass spectrometry proteomics

ArrayExpress
Databa se for gene expression data from microarray experiments in EBI

SGED
Database for Solanaceae expression data using potato cDNA microarrays

TED
tomato microarray data warehouse and databases for tomato microarray expression data and tomato digital expressio n data

CGEP
Website of The Center for Gene Expression Profiling (CGEP) for high quality tomato cDNA microarrays



Metabolite and metabolic pathway databases

KEGG
Database for metabolic pathways, genes, protein families, ligands, drugs, diseases and so on

LycoCyc
Tomato metabolic pathway database

Tomato Metabolite Database (TOME T)
containing data on metabolites such as ascorbate, carotenoids and sugars

Metabolome Tomato D atabase (MoTo DB)
Metablite database dedicated to liquid chromatography-mass spectr ometry-based metabolomics of tomato fruit



Genomic Resources

TGRC
Genbank of wild relatives , monogenic mutants and miscellaneous genetic stocks of tomato at Tomato Genetics Resource Center



Tools

BioPerl for multip le alignment images



Others

RAP-DB
Database of The Ric e Annotation Project providing access to the rice annotation data

TAIR
Website of The In stitute for Genomic Research (TIGR) providing information for analyzing genomes

Populus tri chocarpa Genome
Database for Populus trichocarpa genome

Th e NCBI Entrez Genome Project database
Database for complete and incomplete large-sc ale sequencing projects for cellular organisms

Gene ontology
Website of Gene Ontology Consortium

Plant ontology
Web site of Pant Ontology Consortium.