Micro-Tom resources for functional genomics |

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This site provides information about Tomato full-length cDNA clones derived from a Miniature cultivar Micro-Tom.
We have used Micro-Tom as a tomato model and prepared, as part of the resources of the cultivar, full-length cDNA libraries for EST sequencing and subsequently full-length sequencing of selected clones. (1st, Nov. 2006)
Data Update; Information of HTCs was linked to information of KTU3 (Kazusa Tomato Unigene 3) in MiBASE. 10th Dec. 2009 |
Library |
Origin |
Note |
# of ESTs |
EST Acc. |
# of HTC |
HTC Acc. |
FC |
Fruit |
maturing fruits |
8046 |
BW684914-BW692959 |
1126 |
AB211519-AB211522, AB211526, AK224591-AK224910, AK246135-AK246935 |
LEFL1 |
Leaf |
pathogen-treated |
30679 |
DB678295-DB708973 |
7235 |
AK246936-AK247723, AK319176-AK325622 |
Viruses |
CMV ToMV |
Fungi |
Pythium oligandrum (PO) Non-pathogenic Alternaria alternata Corynespora cassiicola Cladosporium fulvum Fusarium oxysporum f. sp. lycoperrsici Non-pathogenic Fusarium oxysporum |
Bacteria |
P. syringae pv. tomato DC3000 P. syringae pv. tabaci 6605 |
Other treatment ; JA treatment, SA treatment |
LEFL2 |
Fruit |
MG, Breaker, Turning, Red |
18697 |
DB708974-DB727670 |
3235 |
AK247724-AK248077, AK325623-AK328503 |
LEFL3 |
Root |
Roots of tomato with/without flower, Fusarium-treated root |
27216 |
FS179211-FS206426 |
1631 |
AK328504-AK330134 |
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* Information of AB211523,
AB211524,
AB211525 are not contained in KafTom, since the clones are also included AK224591
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AK224910. (see, HyperLinks)
Note. This database is supported by the Research Project for Utilizing Advanced Tehnologies in Agriculture, Forestry and Fisheries, National Bio-Resource Project, and grants from Meiji university and Kazusa DNA Research Institute.
Site disclaimer, The information on this website are provided without any warranty.
News: Total 13227 HTCs were updated. 2009/Mar.