LEFL2027P04      To the result of BLAST   To the result of InterProScanTo Home
DDBJ Acc. number
AK248024


>LEFL2027P04
AAGAGAAAAAAAGATGGCAGTCTACAGCAAAAAAGATGATTTTCAGGCCA
CAATTCAGATTAGTTATGACAAAATGAGTGACCTAATAGCCTTTGATGAT
ACTAAGGCTGGTGTCAAAGGGCTTGTTGATTCCGGAATCAATAAAGTACC
TCAAGTATTCATTCTACCGCCAAAATACAGGGTAAAAACATGTGAAACAC
ACATCAGTTTTCCAGTGATAGACCTCAAAGGCATTGATGAGGATCCGATA
AAGTATAAGGAGATTGTGGACAAAGTTCGAGATGCATCGGAGACATGGGG
TTTCTTTCAAGTGGTTAATCATGGAATTCCAACATCCATCTTGGAAAAAA
CGTTACTAGGAACACGACAGTTTTTCGAGCAAGATACCGAGATCAAGAAA
CAATATTACACTCGAGATATTGGGGAAAAGGTGATTTATACTAGCAATCT
TGATTTGTATAGCCCTTCTGTTCCAGCTGCAAGTTGGAGAGACTCAATTT
TCTTTTTCATGGCTCCGAATCCTCCTAGTCCACAAGAATTTCCAACAGCT
TGCGGGGAAATTCTAATGGACTACTCCAAGTATGTGACGGAATTGGGGTT
CTCCTTGCTTGAATTATTGTCTGAAGGTCTCGGTCTCGATCGTAGTTATC
TGAAAGATTATATGGATTATTGCCATCAAAGTTGCTTGTGCCATTACTAT
CCATCATGCCCTCAGCCAGAACTCACCATGGGCATCAGTCAACATTCCGA
CACTGAGTTTATCACGGTGCTTCTACAAGATGATATCGGTGGACTCCAAG
TTCTTCACCAAAATCAATGGTTTGATGTTCCTCCTATACGTGGTGCTCTT
GTCGTCAATATTGGAGATTTTCTGCAGCTCATGTCAAATGACAAGTACAT
GAGTGTTGAGCACAGAGCAATTGCAAAGAAAGATGGATCAAGAATGTCAG
TTGCCTGCTTCTTTGGTGAAAATCCATTGCAATCTTCAAAGCTGTATGAA
CCAATCACTGAATTGTTATCAGAAGATAATCCTCCAAAATATCACGCAAC
CACAGTGATTGACTACAAAAATTATGTCCTTAATAAAGGCCTAGATGGAA
CTTCTGCGCTGTTGAGTTACAAGATCTAATATAATAATGTACCAGTAAGT
GGTGTTACACCTCTTCATCAAAATAAGGAGTGTTCTTATCTTTTTTTCAA
CGTATTTATCAAGGATAAGTTAGTGAAAATACATCTTAATATCTAAGAAG
TAGTTTTCTTAAAGGGTATTGCCCAAAATAAAAACATCACTTGTTTGGAA
ATGAAAGAAGTATCTATAATTTAGTTCGTTGAGTGTGAGTGTAACTACTA
CTGCTATTGAATAACGAAAACTAGTTTGTGCATTTCATACTTACAAAAAA
AAAAAAAAAATACGTACGGGCCAT


No predicted BACs including this HTC sequence.

KTU3; Kazusa Tomato Unigene ver.3 (KTU3_Contig30083)  (go to MiBASE)
This is a unigene (KTU3) including this clone as an EST member.






Results of BLAST



To the top of page


Database=nr

no alignment

clone homologous sequence description clone length homologous sequence length Identities(%) Match length Mismatches Gap openings clone start clone end homologous sequence start homologous sequence end E-value bit ScoreFrame
LEFL2027P04gi|2218141|gb|AAB71139.1|gb|AAB71139.1| E8 protein homolog [Lycopersicon esculentum]142436499.723621041112633640739+2
LEFL2027P04gi|119640|sp|P10967.1|ACCH3_SOLLCsp|P10967.1|ACCH3_SOLLC RecName: Full=1-aminocyclopropane-1-carboxylate oxidase homolog; AltName: Full=Protein E8///emb|CAA31789.1| E8 protein [Solanum lycopersicum]142436377.3735881053112663632e-163579+2
LEFL2027P04gi|147807864|emb|CAN66433.1|emb|CAN66433.1| hypothetical protein [Vitis vinifera]142436559.723551423651126143653e-122442+2
LEFL2027P04gi|147818396|emb|CAN62402.1|emb|CAN62402.1| hypothetical protein [Vitis vinifera]142436759.03371152314112613671e-120437+2
LEFL2027P04gi|157336661|emb|CAO71346.1|emb|CAO71346.1| unnamed protein product [Vitis vinifera]142436559.723551423651126143654e-120435+2




To the top of page


Database=UniProt

no alignment

clone homologous sequence description clone length homologous sequence length Identities(%) Match length Mismatches Gap openings clone start clone end homologous sequence start homologous sequence end E-value bit ScoreFrame
LEFL2027P04sp|P10967|ACCH3_SOLLCsp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1142436377.3735881053112663631e-164579+2
LEFL2027P04sp|Q84MB3|ACCH1_ARATHsp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1142436553.073581635681126123651e-107390+2
LEFL2027P04sp|Q9C5K7|ACCH2_ARATHsp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1142436949.86363174462112693696e-100364+2
LEFL2027P04sp|Q8H1S4|ACCH3_ARATHsp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1142436950.273641717651126103697e-98357+2
LEFL2027P04sp|O04847|DV4H_CATROsp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2142440148.57385188921126223999e-93340+2




To the top of page


Database=TAIR

no alignment

clone homologous sequence description clone length homologous sequence length Identities(%) Match length Mismatches Gap openings clone start clone end homologous sequence start homologous sequence end E-value bit ScoreFrame
LEFL2027P04AT1G06620.1AT1G06620.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase, putative | chr1:2025617-2027093 FORWARD142436553.073581635681126123651e-108390+2
LEFL2027P04AT1G06640.1AT1G06640.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase, putative | chr1:2032365-2033774 FORWARD142436949.86363174462112693696e-101364+2
LEFL2027P04AT5G59530.1AT5G59530.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase, putative | chr5:24011660-24012941 REVERSE142436450.83362172759112663644e-100362+2
LEFL2027P04AT5G59540.1AT5G59540.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr5:24013519-24014802 REVERSE142436650364174759112673662e-99360+2
LEFL2027P04AT1G06650.2AT1G06650.2 | Symbols: | 2-oxoglutarate-dependent dioxygenase, putative | chr1:2035908-2037185 FORWARD142436950.273641717651126103698e-99357+2




To the top of page


Database=RAP

no alignment

clone homologous sequence description clone length homologous sequence length Identities(%) Match length Mismatches Gap openings clone start clone end homologous sequence start homologous sequence end E-value bit ScoreFrame
LEFL2027P04Os04g0182200|AK067970Os04g0182200|AK067970 2OG-Fe(II) oxygenase domain containing protein.;category III : InterPro domain-containing protein;GO_id No significant hit available;InterPro_id IPR005123 : 2OG-Fe(II) oxygenase;Representative_sequence AK067970142437544.72369190735109953642e-82303+2
LEFL2027P04Os03g0690500|Os03g0690500Os03g0690500|Os03g0690500 2OG-Fe(II) oxygenase domain containing protein.;category III : InterPro domain-containing protein;GO_id No significant hit available;InterPro_id IPR005123 : 2OG-Fe(II) oxygenase;Representative_sequence Os03g0690500142437343.96364193668112683663e-78289+2
LEFL2027P04Os03g0860600|AK071828Os03g0860600|AK071828 Similar to 2-oxoglutarate-dependent oxygenase.;category II : Similar to known protein;GO_id No significant hit available;InterPro_id IPR005123 : 2OG-Fe(II) oxygenase;Representative_sequence AK071828142436145.81358189968112683531e-76284+2
LEFL2027P04Os08g0392100|Os08g0392100Os08g0392100|Os08g0392100 2OG-Fe(II) oxygenase domain containing protein.;category III : InterPro domain-containing protein;GO_id No significant hit available;InterPro_id IPR005123 : 2OG-Fe(II) oxygenase;Representative_sequence Os08g0392100142437645.18363189868112683642e-74277+2
LEFL2027P04Os08g0390200|AK068286Os08g0390200|AK068286 Similar to 2-oxoglutarate-dependent oxygenase.;category II : Similar to known protein;GO_id No significant hit available;InterPro_id IPR005123 : 2OG-Fe(II) oxygenase;Representative_sequence AK068286142439643.4371192968112683717e-72268+2




To the top of page


Database=SGN Tomato UniGene

no alignment

clone homologous sequence description clone length homologous sequence length Identities(%) Match length Mismatches Gap openings clone start clone end homologous sequence start homologous sequence end E-value bit ScoreStrand
LEFL2027P04SGN-U314499SGN-U314499 Tomato 200607 #1 [82 ESTs aligned] arabidopsis/peptide: AT1G06620.1 | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FORWARD | Aliases: F12K11.24, F12K11_24 (evalue: 1e-101, score=367) genbank/nr: gi|2218141|gb|AAB71139.1| E8 protein homolog [Lycopersicon esculentum] (evalue: 0, score=705)142416301001398001139820141702771Plus
LEFL2027P04SGN-U338750SGN-U338750 Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G06620.1 | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FORWARD | Aliases: F12K11.24, F12K11_24 (evalue: 2e-40, score=162) genbank/nr: gi|2218141|gb|AAB71139.1| E8 protein homolog [Lycopersicon esculentum] (evalue: 2e-97, score=358)142469796.769818446739169701176Plus
LEFL2027P04SGN-U314505SGN-U314505 Tomato 200607 #1 [510 ESTs aligned] arabidopsis/peptide: AT1G06620.1 | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FORWARD | Aliases: F12K11.24, F12K11_24 (evalue: 1e-106, score=383) genbank/nr: gi|19199|emb|CAA31789.1| E8 protein [Lycopersicon esculentum] >gi|119640|sp|P10967|ACCO3_LYCES 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein E8) (evalue: 0, score=718)1424148285.58106815406211297311400896Plus
LEFL2027P04SGN-U338747SGN-U338747 Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G06620.1 | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FORWARD | Aliases: F12K11.24, F12K11_24 (evalue: 6e-31, score=132) genbank/nr: gi|2218141|gb|AAB71139.1| E8 protein homolog [Lycopersicon esculentum] (evalue: 3e-59, score=231)142470398.26460712527112457030841Plus
LEFL2027P04SGN-U314506SGN-U314506 Tomato 200607 #1 [35 ESTs aligned] arabidopsis/peptide: AT1G06620.1 | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FORWARD | Aliases: F12K11.24, F12K11_24 (evalue: 5e-51, score=199) genbank/nr: gi|19199|emb|CAA31789.1| E8 protein [Lycopersicon esculentum] >gi|119640|sp|P10967|ACCO3_LYCES 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein E8) (evalue: 2e-97, score=359)1424147488.45485560625462367205e-146517Plus
LEFL2027P04SGN-U314506SGN-U314506 Tomato 200607 #1 [35 ESTs aligned] arabidopsis/peptide: AT1G06620.1 | Symbol: None | 2-oxoglutarate-dependent dioxygenase, putative, similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP:P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family | chr1:2025600-2027270 FORWARD | Aliases: F12K11.24, F12K11_24 (evalue: 5e-51, score=199) genbank/nr: gi|19199|emb|CAA31789.1| E8 protein [Lycopersicon esculentum] >gi|119640|sp|P10967|ACCO3_LYCES 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein E8) (evalue: 2e-97, score=359)1424147484.65495760564105892614208e-105381Plus




To the top of page


Database=DFCI Tomato Gene Index

no alignment

clone homologous sequence description clone length homologous sequence length Identities(%) Match length Mismatches Gap openings clone start clone end homologous sequence start homologous sequence end E-value bit ScoreStrand
LEFL2027P04TC192811TC192811 UniRef100_O24018 Cluster: E8 protein homolog; n=1; Solanum lycopersicum|Rep: E8 protein homolog - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), complete142416061001398001139821141802771Plus
LEFL2027P04DB720802DB720802 homologue to UniRef100_O24018 Cluster: E8 protein homolog; n=1; Solanum lycopersicum|Rep: E8 protein homolog - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (56%)142475497.1770616417065075101239Plus
LEFL2027P04BM410862BM410862 UniRef100_O24018 Cluster: E8 protein homolog; n=1; Solanum lycopersicum|Rep: E8 protein homolog - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (53%)1424643100579002057836564301148Plus
LEFL2027P04TC193327TC193327 UniRef100_P10967 Cluster: 1-aminocyclopropane-1-carboxylate oxidase homolog; n=1; Solanum lycopersicum|Rep: 1-aminocyclopropane-1-carboxylate oxidase homolog - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), complete1424140485.58106815406211295411210896Plus
LEFL2027P04TC200045TC200045 UniRef100_P10967 Cluster: 1-aminocyclopropane-1-carboxylate oxidase homolog; n=1; Solanum lycopersicum|Rep: 1-aminocyclopropane-1-carboxylate oxidase homolog - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (77%)142495285.91816115062877628770706Plus






Results of InterProScan



To the top of page


SEQUENCE: LEFL2027P04_2_ORF1 CRC64: 9078FE5B50977BD6 LENGTH: 375 aa
>LEFL2027P04_2_ORF1 Translation of LEFL2027P04 in frame 2, ORF 1, threshold 50, 375aa
REKKMAVYSKKDDFQATIQISYDKMSDLIAFDDTKAGVKGLVDSGINKVPQVFILPPKYR
VKTCETHISFPVIDLKGIDEDPIKYKEIVDKVRDASETWGFFQVVNHGIPTSILEKTLLG
TRQFFEQDTEIKKQYYTRDIGEKVIYTSNLDLYSPSVPAASWRDSIFFFMAPNPPSPQEF
PTACGEILMDYSKYVTELGFSLLELLSEGLGLDRSYLKDYMDYCHQSCLCHYYPSCPQPE
LTMGISQHSDTEFITVLLQDDIGGLQVLHQNQWFDVPPIRGALVVNIGDFLQLMSNDKYM
SVEHRAIAKKDGSRMSVACFFGENPLQSSKLYEPITELLSEDNPPKYHATTVIDYKNYVL
NKGLDGTSALLSYKI
InterPro
IPR005123
Domain
2OG-Fe(II) oxygenase
PF03171 [224-323]T 1.3e-44 PF03171 2OG-FeII_Oxy 2OG-FeII_Oxy
noIPR
unintegrated
unintegrated
G3DSA:2.60.120.330 [32-374]T 5.5e-95 G3DSA:2.60.120.330 no description no description
PTHR10209 [82-375]T 3.1e-141 PTHR10209 IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMILY MEMBER IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMILY MEMBER
PTHR10209:SF23 [82-375]T 3.1e-141 PTHR10209:SF23 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE
seg [197-212]? NA seg seg seg
SSF51197 [33-368]T 1.9e-95 SSF51197 Clavaminate synthase-like Clavaminate synthase-like

SEQUENCE: LEFL2027P04_2_ORF1 CRC64: 9078FE5B50977BD6 LENGTH: 375 aa
InterPro
IPR005123
Domain
2OG-Fe(II) oxygenase
PFAMPF031712OG-FeII_Oxy
 1.3e-44 [224-323]T       
Parent no parent
Children IPR006620
Found in IPR002283 IPR004574
Contains IPR002057
GO terms none
noIPR
unintegrated
unintegrated
GENE3DG3DSA:2.60.120.330no description
 5.5e-95 [32-374]T       
PANTHERPTHR10209IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMILY MEMBER
 3.1e-141 [82-375]T       
PANTHERPTHR10209:SF231-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE
 3.1e-141 [82-375]T       
SEGseg seg
 NA [197-212]?       
SUPERFAMILYSSF51197Clavaminate synthase-like
 1.9e-95 [33-368]T       
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

SEQUENCE: LEFL2027P04_3_ORF2 CRC64: A3FA5484E0CCB695 LENGTH: 82 aa
>LEFL2027P04_3_ORF2 Translation of LEFL2027P04 in frame 3, ORF 2, threshold 50, 82aa
KIIWIIAIKVACAITIHHALSQNSPWASVNIPTLSLSRCFYKMISVDSKFFTKINGLMFL
LYVVLLSSILEIFCSSCQMTST
No hits reported.

SEQUENCE: LEFL2027P04_3_ORF3 CRC64: 8559929D84E134D4 LENGTH: 51 aa
>LEFL2027P04_3_ORF3 Translation of LEFL2027P04 in frame 3, ORF 3, threshold 50, 51aa
VLSTEQLQRKMDQECQLPASLVKIHCNLQSCMNQSLNCYQKIILQNITQPQ
No hits reported.

SEQUENCE: LEFL2027P04_4_ORF2 CRC64: 374F7347E0A06E7C LENGTH: 75 aa
>LEFL2027P04_4_ORF2 Translation of LEFL2027P04 in frame 4, ORF 2, threshold 50, 75aa
YFGGLSSDNNSVIGSYSFEDCNGFSPKKQATDILDPSFFAIALCSTLMYLSFDMSCRKSP
ILTTRAPRIGGTSNH
No hits reported.

SEQUENCE: LEFL2027P04_4_ORF3 CRC64: C1874F7F5AF07A46 LENGTH: 51 aa
>LEFL2027P04_4_ORF3 Translation of LEFL2027P04 in frame 4, ORF 3, threshold 50, 51aa
KKPHVSDASRTLSTISLYFIGSSSMPLRSITGKLMCVSHVFTLYFGGRMNT
No hits reported.

SEQUENCE: LEFL2027P04_5_ORF2 CRC64: D3FA4C5C577E05A0 LENGTH: 62 aa
>LEFL2027P04_5_ORF2 Translation of LEFL2027P04 in frame 5, ORF 2, threshold 50, 62aa
RFFQDGCWNSMINHLKETPCLRCISNFVHNLLILYRILINAFEVYHWKTDVCFTCFYPVF
WR
No hits reported.

SEQUENCE: LEFL2027P04_6_ORF2 CRC64: 1EBAF25830704B4C LENGTH: 65 aa
>LEFL2027P04_6_ORF2 Translation of LEFL2027P04 in frame 6, ORF 2, threshold 50, 65aa
VLAEGMMDSNGTSNFDGNNPYNLSDNYDRDRDLQTIIQARRTPIPSHTWSSPLEFPRKLL
EILVD
No hits reported.