KaFTom Kazusa Full-length Tomato cDNA Database

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Download dataset

HTC13227_Acc.txt gz, 69 kb The list of DDBJ Accession and HTC clone name
Tomato_HTC13227_nr.txt gz, 4,029 kb NCBI nr BLAST annotations of HTC
Tomato_HTC13227_uniprot.txt gz, 2,825 kb UniProt BLAST annotations of HTC
Tomato_HTC13227_rap.txt gz, 3,507 kb RAP BLAST annotations of HTC
Tomato_HTC13227_tair.txt gz, 3,133 kb TAIR BLAST annotations of HTC
Tomato_HTC13227_sgn.txt gz, 6,140 kb SGN Tomato unigene BLAST annotations of HTC
Tomato_HTC13227_dfci.txt gz, 3,977 kb DFCI Tomato Gene Index BLAST annotations of HTC
HTC13227.ipr.html gz, 21,918 kb Annotations from InterProScan (html)
HTC13227.ipr.raw gz, 3,795 kb Annotations from InterProScan (raw)
HTC13227_vs_BAC.txt gz, 36 kb The list of HTC clone name and predicted BAC clone name
Fasta file of HTC13227 zip, 60,58 kb Sequences of HTCs

Publications

  1. Koh Aoki, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata (2010) Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 2010, 11:210
  2. Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Nozomu Sakurai, Hideyuki Suzuki and Daisuke Shibata (2005) Expressed sequence tags of full-length cDNA clones from the miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom. Plant Biotechnology, 22, 161-165.