KaFTom Kazusa Full-length Tomato cDNA Database

What's new About us

MiBASE

 

Publications

  1. Koh Aoki, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata (2010) Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 2010, 11:210
  2. K. Aoki, K. Yano, N. Sakurai, T. Tsugane, M. Watanabe, Y.-G. Yin, C. Matsukura, D. Shibata (2007) Expressed-based approach toward functional characterization of tomato genes that have no or weak similarity to Arabidopsis genes. Acta Hortic. 745, 457-464.
  3. Kentaro Yano, Manabu Watanabe, Naoki Yamamoto Taneaki Tsugane, Koh Aoki, Nozomu Sakurai and Daisuke Shibata (2006) MiBASE: A database of a miniature tomato cultivar Micro-Tom. Plant Biotechnology, 23, 195-198.
  4. Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Nozomu Sakurai, Hideyuki Suzuki and Daisuke Shibata (2005) Expressed sequence tags of full-length cDNA clones from the miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom. Plant Biotechnology, 22, 161-165.
  5. Naoki Yamamoto, Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Fumi Maeda, Chikara Kuwata, Torki Moez, Yusuke Ban, Shigeo Nishimura and Daisuke Shibata (2005) Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. GENE, 356, 127-134.

Feedbacks, Comments, and Questions

For feedbacks and comments to the database KaFTom,please contact

Kentaro Yano (Meiji University), e-mail: kyano_at_isc.meiji.ac.jp

For feedbacks and comments to the full-length cDNA clones, please contact

Koh Aoki (Kazusa DNA Research Institute) e-mail: kaoki_at_kazusa.or.jp

Funding

A sequencing project of FC clones was supported by the Research Project for Utilizing Advanced Technologies in Agriculture,Forestry and Fisheries.

A sequencing project of LEFL clones was supported by Japan Solanaceae Consortium and The National BioResource Project, Genome Program.

Contributors

KaFTom was developed by Kentaro Yano, and is maintained by Yano Lab, Meiji University

Contact: Kentaro Yano (Ph. D., Lecturer) Bioinformatics Lab., School of Agriculture, Meiji University

Sequencing of FC clones was performed by Taneaki Tsugane and Manabu Watanabe (Chiba Prefectural Agriculture and Forestry Research Center) .

Sequencing of LEFL clones was performed by Takanori Narita, Tadasu Shin-i, and Yuji Kohara (National Institute of Genetics, Mishima, Japan), and Lab of Bioengineering, Kazusa DNA Research Institute

Contact: Koh Aoki (Ph. D., Lab Head)
Lab of Bioengineering, Kazusa DNA Research Institute,
2-6-7 Kazusa-Kamatari, Kisarazu, Chiba
292-0818 Japan
kaoki_at_kazusa.or.jp
Tel: +81-438-52-3947
Fax: +81-438-52-3948

RNA for LEFL1 library (leaf cDNA library) was prepared by

Tsutomu Arie's Lab (Tokyo University of Agriculture and Technology), Hiroshi Ezura's Lab (University of Tsukuba), Yuki Ichinose's Lab (Okayama University), Motoichiro Kodama's Lab (Tottori University), Hideki Takahashi's Lab (Tohoku University), and Yuichiro Watanabe's Lab (The University of Tokyo). (In alphabetical order of PI's family name.)

RNA for LEFL2 library (fruit cDNA library) was prepared by

Taneaki Tsugane and Manabu Watanabe (Chiba Prefecture Agriculture and Forestry Research Center) and Nozomu Sakurai (Kazusa DNA Research Institute).

RNA for LEFL 3 library (root cDNA library) was prepared by

Tsutomu Arie's Lab (Tokyo University of Agriculture and Technology) and Shinobu Satoh's Lab (University of Tsukuba).

Full-length-enriched cDNA libraries were constructed by Hitachi Instruments Service and Dnaform.