KaFTom Kazusa Full-length Tomato cDNA Database

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Micro-Tom resources for functional genomics

This site provides information about Tomato full-length cDNA clones derived from a Miniature cultivar Micro-Tom.
We have used Micro-Tom as a tomato model and prepared, as part of the resources of the cultivar, full-length cDNA libraries for EST sequencing and subsequently full-length sequencing of selected clones. (1st, Nov. 2006)

Data Update; Information of HTCs was linked to information of KTU3 (Kazusa Tomato Unigene 3) in MiBASE. 10th Dec. 2009
Library

Origin
Note
# of ESTs
EST Acc.
# of HTC
HTC Acc.
FC
Fruit
 maturing fruits
8046
BW684914-BW692959
1126
AB211519-AB211522,
AB211526,
AK224591-AK224910,
AK246135-AK246935
LEFL1
Leaf
pathogen-treated
30679
DB678295-DB708973

7235
AK246936-AK247723,
AK319176-AK325622
Viruses CMV ToMV
Fungi
Pythium oligandrum (PO)
Nonpathogenic Alternaria alternata
Corynespora cassiicola
Cladosporium fulvum
Fusarium oxysporum f. sp. lycoperrsici
Non-pathogenic Fusarium oxyspor
Bacteria
P. s. pv. tomato DC3000
P. s. pv. tabaci 660
Other treatment ; JA treatment, SA treatment
LEFL2
Fruit
MG, Breaker, Turning, Red
18697
DB708974-DB727670
3235
AK247724-AK248077,
AK325623-AK328503
LEFL3
Root
 Roots of tomato with/without flower, Fusarium-treated root
27216
FS179211-FS206426
1631
AK328504-AK330134

Publications

  1. Koh Aoki, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata (2010) Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 2010, 11:210
  2. K. Aoki, K. Yano, N. Sakurai, T. Tsugane, M. Watanabe, Y.-G. Yin, C. Matsukura, D. Shibata (2007) Expressed-based approach toward functional characterization of tomato genes that have no or weak similarity to Arabidopsis genes. Acta Hortic. 745, 457-464.
  3. Kentaro Yano, Manabu Watanabe, Naoki Yamamoto Taneaki Tsugane, Koh Aoki, Nozomu Sakurai and Daisuke Shibata (2006) MiBASE: A database of a miniature tomato cultivar Micro-Tom. Plant Biotechnology, 23, 195-198.
  4. Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Nozomu Sakurai, Hideyuki Suzuki and Daisuke Shibata (2005) Expressed sequence tags of full-length cDNA clones from the miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom. Plant Biotechnology, 22, 161-165.
  5. Naoki Yamamoto, Taneaki Tsugane, Manabu Watanabe, Kentaro Yano, Fumi Maeda, Chikara Kuwata, Torki Moez, Yusuke Ban, Shigeo Nishimura and Daisuke Shibata (2005) Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. GENE, 356, 127-134.

* Information of AB211523, AB211524, AB211525 are not contained in KafTom, since the clones are also included AK224591 - AK22491 0. (see, HyperLinks)

Note. This database is supported by the Research Project for Utilizing Advanced Tehnologies in Agriculture, Forestry and Fisheries, National Bio-Resource Project, and grants from Meiji university and Kazusa DNA Research Institute.
Site disclaimer, The information on this website are provided without any warranty.

News: Total 13227 HTCs were updated. 2009/Mar.