Micro-Tom resources for functional genomics
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This site provides information about Tomato full-length cDNA clones derived from a Miniature cultivar Micro-Tom.
We have used Micro-Tom as a tomato model and prepared, as part of the resources of the cultivar, full-length cDNA libraries for EST sequencing and subsequently full-length sequencing of selected clones. (1st, Nov. 2006)
Data Update; Information of HTCs was linked to information of KTU3 (Kazusa Tomato Unigene 3) in MiBASE. 10th Dec. 2009
|
Library |
Origin
|
Note |
# of ESTs |
EST Acc. |
# of HTC |
HTC Acc. |
FC |
Fruit |
maturing fruits |
8046 |
BW684914-BW692959 |
1126 |
AB211519-AB211522,
AB211526,
AK224591-AK224910,
AK246135-AK246935 |
LEFL1 |
|
pathogen-treated |
30679 |
DB678295-DB708973 |
|
AK246936-AK247723,
AK319176-AK325622 |
| Viruses
|
CMV ToMV
|
| Fungi |
Pythium oligandrum (PO)
Nonpathogenic Alternaria alternata
Corynespora cassiicola
Cladosporium fulvum
Fusarium oxysporum f. sp. lycoperrsici
Non-pathogenic Fusarium oxyspor |
| Bacteria |
P. s. pv. tomato DC3000
P.
s. pv. tabaci 660 |
| Other treatment ; JA treatment, SA treatment
|
LEFL2 |
|
MG, Breaker, Turning, Red |
18697 |
DB708974-DB727670 |
3235 |
AK247724-AK248077,
AK325623-AK328503 |
LEFL3 |
Root |
Roots of tomato with/without flower, Fusarium-treated root |
27216 |
FS179211-FS206426 |
1631 |
AK328504-AK330134 |
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* Information of AB211523,
AB211524,
AB211525 are not contained in KafTom, since the clones are also included AK224591
-
AK22491
0. (see, HyperLinks)
Note. This database is supported by the Research Project for Utilizing Advanced Tehnologies in Agriculture, Forestry and Fisheries, National Bio-Resource Project, and grants from Meiji university and Kazusa DNA Research Institute.
Site disclaimer, The information on this website are provided without any warranty.
News: Total 13227 HTCs were updated. 2009/Mar.
Kazusa Full-length Tomato cDNA Database
